Added TODO
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TODO.md
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TODO
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====
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* Get rid of all global variables.
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* Break main() into smaller chunks; operations that are timed should become independent functions.
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* Dynamically allocate the big arrays.
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* Create a key-value config file reader to replace the external parameter files.
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* Remove all ifdef blocks, options should be selected in the config file.
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* Optional HDF5 output.
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* In the config file let choose number of digits for ASCII output and 32 or 64-bit floats for HDF5.
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